Conferences / Workshops
- F. De Moor, M. Mognol, C. Deltel, E. Drezen, J. Legriel, D. Lavenier, MiMyCS: A Processing-in-Memory Read Mapper for Compressing Next-Gen Sequencing Datasets, 11th International Workshop on High Performance Computing on Bioinformatics, BIBM 2024, Dec. 2024, Lisbon, Portugal
- M. Mognol, D. Lavenier, J. Legriel, Parallelization of the Banded Needleman & Wunsch Algorithm on UPMEM PiM Architecture for Long DNA Sequence Alignment. ICPP 2024: International Conference on Parallel Processing, Aug 2024, Gotland – Sweeden, [hal]
- M. Mognol, D. Lavenier, J. Legriel, Sort Algorithm on Processing-in-Memory, COMPAS 2024, Conférence francophone d’informatique en Parallélisme, Architecture et Système, Nantes, Juillet 2024 [slides]
Talks
- D. Lavenier, Compression of Human Genomic Data, 2nd minisymposium on applications and benefits of UPMEM commercial Massively Parallel Processing-in-Memory Platform, EURO-PAR 2024, Madrid, Aug 2024 [slides]
- D. Lavenier, Protein Alignment on UPMEM PiM Architecture, 1st minisymposium on applications and benefits of UPMEM commercial Massively Parallel Processing-in-Memory Platform, EURO-PAR 2023, Limassol, Cyprus, Aug. 2023 [slides]
- D. Lavenier, Exploring genomic algorithms on Processing-in-Memory Architecture, Keynote speaker, 5th Workshop on Accelerator Architecture in Computational Biology and Bioinformatics, ISCA 2023, Orlando, Florida, USA, June 2023 [slides]
- M. Mognol, D. Lavenier, J. Legriel, Parallelization of the banded Needleman & Wunsch algorithm on UPMEM PiM architecture for long DNA sequence alignment, 5th Workshop on Accelerator Architecture in Comutational Biology and Bioinformatics, ISCA 2023, Orlando, Florida, USA, June 2023 [paper]
