Publications

Conferences / Workshops

  • M. Mognol, F. De Moor, E. Drezen, Y. Falevoz, D. Lavenier, Evaluating Energy Efficiency of Genomics Algorithms on Processing-in-Memory Architectures, PECS 2025 – Workshop on Performance and Energy Efficiency in Concurrent and Distributed Systems, EuroPar, Dresden, Germany, 2025 [pdf]
  • C. Airault, C. Deltel, F. De Moor, E. Drezen, M. Mognol and D. Lavenier, Protein database search using Processing-in-Memory architecture, 2025 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Milano, Italy, 2025 [pdf]
  • F. De Moor, M. Mognol, C. Deltel, E. Drezen, J. Legriel, D. Lavenier, MiMyCS: A Processing-in-Memory Read Mapper for Compressing Next-Gen Sequencing Datasets, 11th International Workshop on High Performance Computing on Bioinformatics, BIBM 2024, Dec. 2024, Lisbon, Portugal [hal]
  • M. Mognol, D. Lavenier, J. Legriel, Parallelization of the Banded Needleman & Wunsch Algorithm on UPMEM PiM Architecture for Long DNA Sequence Alignment. ICPP 2024: International Conference on Parallel Processing, Aug 2024, Gotland – Sweeden, [hal]
  • M. Mognol, D. Lavenier, J. Legriel, Sort Algorithm on Processing-in-Memory, COMPAS 2024, Conférence francophone d’informatique en Parallélisme, Architecture et Système, Nantes, Juillet 2024 [slides]

Talks

  • D. Lavenier, Compression of Human Genomic Data, 2nd minisymposium on applications and benefits of UPMEM commercial Massively Parallel Processing-in-Memory Platform, EURO-PAR 2024, Madrid, Aug 2024 [slides]
  • D. Lavenier, Protein Alignment on UPMEM PiM Architecture, 1st minisymposium on applications and benefits of UPMEM commercial Massively Parallel Processing-in-Memory Platform, EURO-PAR 2023, Limassol, Cyprus, Aug. 2023 [slides]
  • D. Lavenier, Exploring genomic algorithms on Processing-in-Memory Architecture, Keynote speaker, 5th Workshop on Accelerator Architecture in Computational Biology and Bioinformatics, ISCA 2023, Orlando, Florida, USA, June 2023 [slides]
  • M. Mognol, D. Lavenier, J. Legriel, Parallelization of the banded Needleman & Wunsch algorithm on UPMEM PiM architecture for long DNA sequence alignment, 5th Workshop on Accelerator Architecture in Comutational Biology and Bioinformatics, ISCA 2023, Orlando, Florida, USA, June 2023 [paper]

Other

  • D. Lavenier, Délocaliser les calculs en mémoire : le concept processing in memory, dans le cacul à découvert, CNRS édition, 2025 [pdf]